PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA16G00118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 338aa    MW: 37806.9 Da    PI: 10.327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA16G00118genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-061436123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F+r  nL+ H r H
  AA16G00118 14 FICEICNKGFKRDQNLQLHRRGH 36
                89*******************88 PP

2zf-C2H211.90.000791113123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +   s+ k H + +
  AA16G00118  91 WKCEKCSKKYAVMSDWKAHTKIC 113
                 58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.1E-81336No hitNo description
Gene3DG3DSA:3.30.160.603.7E-61336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0111436IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8661436IPR007087Zinc finger, C2H2
PfamPF121711.2E-51436IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM003551205686IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-479112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-886111No hitNo description
SMARTSM0035517091111IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALSPNSLMA TNRFICEICN KGFKRDQNLQ LHRRGHNLPW KLKQKSNKDQ IKKKVYICPE  60
KSCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVMSDWKAHT KICGTKEYRC  120
DCGTLFSRKD SFITHRAFCD ALAEESARFI STPSVATLDA SSNFNININH GNINPNNTIS  180
SLGQNLWNTQ KQPSSQQWLL NENTIKNNNN TFKIFKNQDL DYGLGTLASM SATALLQKAA  240
QMGSKRLSNS NSINGSSSFG LMSSSIFKNM NPNFKNLNKQ KDLTSSGSDE GGFTRDFLGV  300
GSSQELEQSR WPLMVNVNGL PKWSPATVSG TRATDIAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150182.11e-140PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ944L31e-134IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLM4EYE81e-139M4EYE8_BRARP; Uncharacterized protein
STRINGBra033840.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.19e-99C2H2-like zinc finger protein